HHMMiR is a de novo approach that is used for miRNA hairpin prediction in the absence of evolutionary conservation. This…
The importance of RNA structures has been observed in the life cycle of RNA-containing viruses, including the influenza virus. At…
Predictions of one-dimensional protein structures such as secondary structures is useful for predicting three-dimensional structure and important for understanding the…
Determining and knowing the RNA secondary structure from sequence data by computational predictions is a long-standing problem. Its solution has…
The RNA secondary structure is mainly consist of a stem structure formed by complementary pairing of contiguous bases and a cyclic structure formed by non-pairing of…
MicroRNAs are small single stranded RNA molecules of nearly 22 nt in length which play an important role in post…
AutoDep is a web-based system for the deposition and validation of large macromolecular structures including proteins and ligand-binding structures. AutoDep…
PDBeMotif is a highly fast and powerful search tool that facilitates exploration of the Protein Data Bank (PDB) by combining…
In compact globular proteins, a polypeptide often makes a sharp turn called a reverse turn. For example, these turns often link…
According to one definition a turn is a structural motif where the Cα atoms of two residues separated by a few…